Perry, A.M., Hernday, A.D., and Nobile, C.J. (2020) Unraveling how Candida albicans forms sexual biofilms. Journal of Fungi 6: 14.

Gong, J., Wu, J., Ikeh, M., Tao, L., Zhang, Y., Bing, J., Nobile, C.J., Huang, G. (2020) Antifungal activity of mammalian Serum amyloid A1 against Candida albicans. Antimicrobial Agents and Chemotherapy 64: e01975-19

Ul-Hasan, S., Rodríguez-Román, E., Reitzel, A.M., Adams, R.M.M., Herzig, V., Nobile, C.J., Saviola, A.J., Trim, S.A., Stiers, E.E., Moschos, S.A., Keiser, C.N., Petras, D., Moran, Y., Colston, T.J. (2019) The emerging field of venom-microbiomics for exploring venom as a microenvironment, and the corresponding Initiative for Venom Associated Microbes and Parasites (iVAMP). Toxicon:X 4:100016.

Ul-Hasan, S., Bowers, R.M., Figueroa-Montiel, A., Licea-Navarro, A.F., Beman, J.M., Woyke, T., and Nobile, C.J. (2019) Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California. PLoS One 14: e0212355.

Maciel, E.I., Jiang, C., Barghouth, P.G., Nobile, C.J., and Oviedo, N.J. (2019) The planarian Schmidtea mediterranea is a new model to study host-pathogen interactions during fungal infections. Developmental & Comparative Immunology 93: 18-27.

Gulati, M., Lohse, M.B., Ennis, C.L., Gonzalez, R.E., Perry, A.M., Bapat, P., Valle Arevalo, A., Rodriguez, D.L., Nobile, C.J. (2018) In vitro culturing and screening of Candida albicans biofilms. Current Protocols in Microbiology 50: e60.

Van Dijck, P., Sjollema, J., Cammue, B.P.A., Lagrou, K., Berman, J., d’Enfert, C., Andes, D.R., Arendrup, M.C., Brakhage, A.A., Calderone, R., Cantón, E., Coenye, T., Cos, P., Cowen, L.E., Edgerton, M., Espinel-Ingroff, A., Filler, S.G., Ghannoum, M., Gow, N.A.R., Haas, H., Jabra-Rizk, M., Johnson, E.M., Lockhart, S.R., Lopez-Ribot, J.L., Maertens, J., Munro, C.A., Nett, J.E., Nobile, C.J., Pfaller, M.A., Ramage, G., Sanglard, D., Sanguinetti, M., Spriet, I., Verweij, P., Warris, A., Wauters, J., Yeaman, M.R., Zaat, S.A.J., Thevissen, K. (2018) Methodologies for in vitro and in vivo evaluation of efficacy of antifungal and antibiofilm agents and surface coatings against fungal biofilms. Microbial Cell 5: 300-326.

Lohse, M.B., Gulati, M., Johnson, A.D., and Nobile, C.J. (2018) Development and regulation of single- and multi-species Candida albicans biofilms. Nature Reviews Microbiology 16: 19-31.

Gulati, M., Ennis, C.L., Rodriguez, D.L., and Nobile, C.J. (2017) Visualization of biofilm formation in Candida albicans using an automated microfluidic device. JoVE 130: e56743.

Tao, L., Zhang, Y., Fan, S., Nobile, C.J., Guan, G., and Huang, G. (2017) Integration of the tricarboxylic acid (TCA) cycle with cAMP signaling and Sfl2 pathways in the regulation of CO2 sensing and hyphal development in Candida albicans. PLoS Genetics 13: e1006949.

Srivastava, A., Sircaik, S., Husain, F., Thomas, E., Ror, S., Rastogi, S., Alim, D., Bapat, P., Andes, D.R., Nobile, C.J., and Panwar, S.L. (2017) Distinct roles of the 7-transmembrane receptor protein Rta3 in regulating the asymmetric distribution of phosphatidylcholine across the plasma membrane and biofilm formation in Candida albicans. Cellular Microbiology 19: e12767.

Giosa, D., Felice, M.R., Lawrence, T.J., Gulati, M., Scordino, F., Giuffre, L., Passo, C.L., D’Alessandro, E., Criseo, G., Ardell, D.H., Hernday, A.D., Nobile, C.J., and Romeo, O. (2017) Whole RNA-sequencing and transcriptome assembly of Candida albicans and Candida africana under chlamydospore-inducing conditions. Genome Biology and Evolution 9: 1971-1977.

Jenull, S., Tscherner, M., Gulati, M., Nobile, C.J., Chauhan, N., and Kuchler, K. (2017) The Candida albicans HIR histone chaperone regulates yeast-to-hyphae transition by controlling the sensitivity to morphogenesis signals. Scientific Reports 7: 8308.

Xu, H., Sobue, T., Bertolini, M., Thompson, A., Vickerman, M., Nobile, C.J., and Dongari-Bagtzoglou, A. (2017) S. oralis activates the Efg1 filamentation pathway in C. albicans to promote cross-kingdom interactions and mucosal biofilms. Virulence 8: 1602-1617.

Lohse, M.B., Gulati, M., Valle Arevalo, A., Fishburn, A., Johnson, A.D., and Nobile, C.J. (2017) Assessment and optimizations of Candida albicans in vitro biofilm assays. Antimicrobial Agents and Chemotherapy 61: e02749-16.

Liang, W., Guan, G., Dai, Y., Cao, C., Tao, L., Du, H., Nobile, C.J., Zhong, J., and Huang, G. (2016) Lactic acid bacteria differentially regulate filamentation in two heritable cell types of Candida albicans. Molecular Microbiology 102: 506-519.

Winter, M.B., Salcedo, E.C., Lohse, M.B., Hartooni, N., Gulati, M., Sanchez, H., Takagi, J., Hube, B., Andes, D.R., Johnson, A.D., Craik, C.S., and Nobile, C.J. (2016) Global Identification of biofilm-specific proteolysis in Candida albicans. mBio 7: e01514-16.

Vargas, D., Hageman, S., Gulati, M., Nobile, C.J., and Rawat, M. (2016) S-nitrosomycothiol reductase and mycothiol are required for survival under aldehyde stress and biofilm formation in Mycobacterium smegmatis. IUBMB Life 68: 621-628.

Zhang, Y., Tao, L., Zhang, Q., Guan, G., Nobile, C.J., Zheng, Q., Ding, X., and Huang, G. (2016) The gray phenotype and tristable phenotypic transitions in the human fungal pathogen Candida tropicalis. Fungal Genetics and Biology 93: 10-16.

Gulati, M., and Nobile, C.J. (2016) Candida albicans biofilms: development, regulation, and molecular mechanisms. Microbes and Infection 18: 310-321.

Hernday, A.D., Lohse, M.B., Nobile, C.J., Noiman, L., Laksana, C.N., and Johnson, A.D. (2016) Ssn6 defines a new level of regulation of white-opaque switching in Candida albicans and is required for the stochasticity of the switch. mBio 7: e01565-15.

Felice, M.R., Gulati, M., Giuffre, L., Giosa, D., Di Bella, L.M., Criseo, G., Nobile, C.J., Romeo, O., Scordino, F. (2016)
Molecular characterization of the N-acetylglucosamine catabolic genes in Candida africana, a natural N-acetylglucosamine kinase (HXK1) mutant. PLoS One 11: e0147902.

Lohse, M.B., Kongsomboonvech, P., Madrigal, M., Hernday, A.D., and Nobile, C.J. (2016) Genome-wide chromatin immunoprecipitation in Candida albicans and other yeasts. In Methods in Molecular Biology: Yeast Functional Genomics: Methods and Protocols. Humana Press 1361: 161-184.

Nobile, C.J., and Johnson, A.D. (2015) Candida albicans biofilms and human disease. Annual Reviews Microbiology 69: 71-92.

Du, H., Guan, G., Li, X., Gulati, M., Tao, L., Cao, C., Zhu, L., Johnson, A.D., Nobile, C.J., and Huang, G. (2015) N-Acetylglucosamine-induced cell death in Candida albicans and its implications for adaptive mechanisms of nutrient sensing in yeasts. mBio 6: e01376-15.

Fox, E.P., Bui, C.K., Nett, J.E., Hartooni, N., Mui, M.C., Andes D.R., Nobile, C.J., and Johnson, A.D. (2015) An expanded regulatory network temporally controls Candida albicans biofilm formation. Molecular Microbiology 96: 1226-1239.

Bertolini, M.M., Xu, H., Sobue, T., Nobile, C.J., Cury, A., and Dongari-Bagtzoglou, A. (2015) Candida-streptococcal mucosal biofilms display distinct structural and virulence characteristics depending on growth conditions and hyphal morphotypes. Molecular Oral Microbiology 30: 307-322.;jsessionid=4FC681BD4EF9C13316732564A7121D87.f03t01

Fox, E.P., Singh-Babak, S.D., Hartooni, N., and Nobile, C.J. (2015) Biofilms and antifungal resistance. In Antifungals: From Genomics to Resistance and the Development of Novel Agents. Caister Academic Press: 71-90.

Wells, M.L., Washington, O.L., Hicks, S.N., Nobile, C.J., Hartooni, N., Wilson, G.M., Zucconi, B.E., Huang, W., Li, L., Fargo, D.C., and Blackshear, P.J. (2015) Post-transcriptional regulation of transcript abundance by a conserved member of the tristetraprolin family in Candida albicans. Molecular Microbiology 95: 1036-1053.

Kavanaugh, N.L., Zhang, A.Q., Nobile, C.J., Johnson, A.D., and Ribbeck, K. (2014) Mucins suppress virulence traits of Candida albicans. mBio 5: e01911-14.

Tao, L., Cao, C., Liang, W., Guan, G., Zhang, Q., Nobile, C.J., and Huang, G. (2014) White cells facilitate opposite- and same-sex mating of opaque cells in Candida albicans. PLoS Genetics 10: e1004737. Fox, E.P.,

Fox, E.P., Cowley, E.S., Nobile, C.J., Hartooni, N., Newman, D.K., and Johnson, A.D. (2014) Anaerobic bacteria grow within Candida albicans biofilms and induce biofilm formation in suspension cultures. Current Biology 24: 2411-2416.

Johnson, L., Gaab, E.M., Sanchez, J., Bui, P.Q., Nobile, C.J., Hoyer, K.K., Peterson, M.W., and Ojcius, D.M. (2014) Valley fever: danger lurking in a dust cloud. Microbes and Infection 16: 591-600. Nobile, C.J., Fox, E.P.,

Nobile, C.J., Fox, E.P., Hartooni, N., Mitchell, K.F., Hnisz, D., Andes, D.R., Kuchler, K., and Johnson, A.D. (2014) A histone deacetylase complex mediates biofilm dispersal and drug resistance in Candida albicans. mBio 5: e01201-14.

Tao, L., Du, H., Guan, G., Dai, Y., Nobile, C.J., Liang, W., Cao, C., Zhang, Q., Zhong, J., and Huang, G. (2014) Discovery of a “white-gray-opaque” tristable phenotypic switching system in Candida albicans: roles of non-genetic diversity in host adaptation. PLoS Biology 12: e1001830.

Hernday, A.D., Lohse, M.B., Fordyce, P.M., Nobile, C.J., DeRisi, J.L., and Johnson, A.D. (2013) Structure of the transcriptional network controlling white-opaque switching in Candida albicans. Molecular Microbiology 90: 22-35.

Fox, E.P., and Nobile, C.J. (2013) The Role of Candida albicans biofilms in human disease. In Candida albicans: Symptoms, Causes and Treatment Options. Nova Science Publishers: 1-24. Guan, G., Xie, J.,

Guan, G., Xie, J., Tao, L., Nobile, C.J., Sun, Y., Cao, C., Tong, Y., and Huang, G. (2013) Bcr1 plays a central role in the regulation of opaque cell filamentation in Candida albicans. Molecular Microbiology 89: 732-750.

Xu, H., Nobile, C.J., and Dongari-Bagtzoglou, A. (2013) Glucanase induces filamentation of the fungal pathogen Candida albicans. PLoS One 8: e63736.

Lohse, M.B., Hernday, A.D., Fordyce, P.M., Noiman, L., Sorrells, T.R., Hanson-Smith, V., Nobile, C.J., DeRisi, J.L., and Johnson, A.D. (2013) Identification and characterization of a previously undescribed family of sequence-specific DNA-binding domains. PNAS 110: 7660-7665.

Lin, C., Kabrawala, S., Fox, E., Nobile, C.J., Johnson, A.D., and Bennett, R.J. (2013) Genetic control of conventional and pheromone-stimulated biofilm formation in Candida albicans. PLoS Pathogens 9: e1003305.

Xie, J., Tao, L., Nobile, C.J., Tong, Y., Guan, G., Sun, Y., Cao, C., Hernday, A.D., Johnson, A.D., Zhang, L., Bai, F., and Huang, G. (2013) White-opaque switching in natural MTLa/α isolates of Candida albicans: evolutionary implications for roles in host adaptation, pathogenesis, and sex. PLoS Biology 11: e1001525. Hnisz, D.,

Hnisz, D., Bardet, A.F., Nobile, C.J., Petryshyn, A., Glaser, W., Schock, U., Stark, A., and Kuchler, K. (2012) A histone deacetylase adjusts transcription kinetics at coding sequences during Candida albicans morphogenesis. PLoS Genetics 8: e1003118. Fox, E.P., and

Fox, E.P., and Nobile, C.J. (2012) A sticky situation: untangling the transcriptional network controlling biofilm development in Candida albicans. Transcription 3: 315-322.

Nobile, C.J., Fox, E.P, Nett, J.E., Sorrells, T.R., Mitrovich, Q.M., Hernday, A.D., Tuch, B.B., Andes, D.R., and Johnson, A.D. (2012) A recently evolved transcriptional network controls biofilm development in Candida albicans. Cell 148: 126-138.

Luo, G., Ibrahim, A.S., Spellberg, B., Nobile, C.J., Mitchell, A.P., and Fu, Y. (2010) Candida albicans Hyr1p confers resistance to neutrophil killing and is a potential vaccine target. Journal of Infectious Diseases 201: 1718-1728.

Fuchs, B.B., Eby, J., Nobile, C.J., El Khoury, J.B., Mitchell, A.P., and Mylonakis, E. (2010) Role of filamentation in Galleria mellonella killing by Candida albicans. Microbes and Infection 12: 488-496.

Nobile, C.J., Nett J.E., Hernday, A.D., Homann, O.R., Deneault, J., Nantel, A., Andes, D.R., Johnson, A.D., and Mitchell, A.P. (2009) Biofilm matrix regulation by Candida albicans Zap1. PLoS Biology 7: e1000133.

Chamilos, G., Nobile, C.J., Bruno, V.M., Lewis, R.E., Mitchell, A.P., and Kontoyiannis, D.P. (2009) Candida albicans Cas5, a regulator of cell wall integrity, is required for virulence in murine and Toll mutant fly models. Journal of Infectious Diseases 200: 152-157.

Nobile, C.J., and Mitchell, A.P. (2009) Large-scale gene disruption using the UAU1 cassette. In Methods in Molecular Biology: Candida albicans Methods and Protocols. Humana Press 499: 175-194.

Nobile, C.J. (2008) Genetics and genomics of Candida albicans biofilm formation. VDM Verlag Publishers.

Nobile, C.J., Schneider, H.A., Nett, J.E., Sheppard, D.C., Filler, S.G., Andes, D.R., and Mitchell, A.P. (2008) Complementary adhesin function in C. albicans biofilm formation. Current Biology 18: 1017-1024.

Nobile, C.J., Solis, N., Myers, C.L., Fay, A.J., Deneault, J., Nantel, A., Mitchell, A.P., and Filler, S.G. (2008) Candida albicans transcription factor Rim101 mediates pathogenic interactions through cell wall functions. Cellular Microbiology 10: 2180-2196.

Nobile, C.J., and Mitchell, A.P. (2007) Microbial biofilms: e pluribus unum. Current Biology 17: R349-353.

Villar, C.C., Kashleva, H., Nobile, C.J., Mitchell, A.P., and Dongari-Bagtzoglou, A. (2007) Mucosal tissue invasion by Candida albicans is associated with E-cadherin degradation, mediated by transcription factor Rim101 and protease Sap5. Infection and Immunity 75: 2126-2135.

Nobile, C.J., Nett, J.E., Andes, D.R., and Mitchell, A.P. (2006) Function of C. albicans adhesin Hwp1 in biofilm formation. Eukaryotic Cell 5: 1604-1610.

Nobile, C.J., and Mitchell, A.P. (2006) Genetics and genomics of Candida albicans biofilm formation. Cellular Microbiology 8: 1382-1391.

Nobile, C.J., Andes, D.R., Nett, J.E., Smith, F.J., Yue, F., Phan, Q.T., Edwards, J.E., Filler, S.G., and Mitchell, A.P. (2006) Critical role of Bcr1-dependent adhesins in C. albicans biofilm formation in vitro and in vivo. PLoS Pathogens 2: 636-649.

Nobile, C.J., and Mitchell, A.P. (2006) Postgenomic strategies for genetic analysis: insight from Saccharomyces cerevisiae and Candida albicans. In Molecular Principles of Fungal Pathogenesis. ASM Press: 35-44.

Bruno, V.M., Kalachikov, S., Subaran, R., Nobile, C.J., Kyratsous, C., and Mitchell, A.P. (2006) Control of the C. albicans cell wall damage response by transcriptional regulator Cas5. PLoS Pathogens 2: 204-210.

Richard, M.L., Nobile, C.J., Bruno, V.M., and Mitchell, A.P. (2005) Candida albicans biofilm-defective mutants. Eukaryotic Cell 4: 1493-1502.

Nobile, C.J., and Mitchell, A.P. (2005) Regulation of cell-surface genes and biofilm formation by the C. albicans transcription factor Bcr1p. Current Biology 15: 1150-1155.

Nobile, C.J., and Johns, P.M. (2005) Prelude to a kiss: evidence for mate discrimination in the striped bark scorpion, Centruroides vittatus. Journal of Insect Behavior 18: 405-413.

Nobile, C.J., Bruno, V.M., Richard, M.L., Davis, D.A., and Mitchell, A.P. (2003) Genetic control of chlamydospore formation in Candida albicans. Microbiology 149: 3629-3637.