Publications Page for Jason Raymond

Raymond Laboratory

UNIVERSITY OF CALIFORNIA MERCED

PUBLICATIONS

Sattley WM, Madigan MT, Swingley WD, Cheung PC, Clocksin KM, Conrad AL, Dejesa LC, Honchak BM, Jung DO, Karbach LE, Kurdoglu A, Lahiri S, Mastrian SD, Page LE, Taylor HL, Wang ZT, Raymond J, Chen M, Blankenship RE, Touchman JW. (2008) The genome of Heliobacterium modesticaldum, a phototrophic representative of the Firmicutes containing the simplest photosynthetic apparatus. Journal of Bacteriology, 190:4687-96.
Raymond, J. and Swingley, W.D. (2008) Phototroph Genomics: Ten Years On. Photosynthesis Research, in press.
Northen TR, Lee JC, Hoang L, Raymond J, Hwang DR, Yannone SM, Wong CH, Siuzdak G. (2008) A nanostructure-initiator mass spectrometry-based enzyme activity assay. Proceedings of the National Academy of Sciences, 105:3678-83.
Raymond, J. (2008) Coloring in the tree of life. Trends in Microbiology, 16:41-3.
Swingley W.D., Chen M., Cheung P.C., Conrad A.L., Dejesa L.C., Hao J., Honchak B.M., Karbach L.E., Kurdoglu A., Lahiri S, Mastrian S.D., Miyashita H., Page L.E., Ramakrishna P., Satoh S., Sattley W.M., Shimada Y., Taylor H.L., Tomo T., Tsuchiya T., Wang Z.T., Raymond J., Mimuro M., Blankenship R.E. and Touchman J.W. (2008) Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina. Proceedings of the National Academy of Sciences, 105:2005-10.
Raymond, J. and Blankenship, R.E. (2008) The Origin of the Oxygen Evolving Complex. Coordination Chemistry Reviews, 252:377-83.
Swingley, W.D., Blankenship, R.E. and Raymond, J., (2008) Integrating Markov clustering and molecular phylogenetics to reconstruct the cyanobacterial species tree from conserved protein families. Molecular Biology and Evolution, 25:643-54.
Swingley, W.D., Blankenship, R.E., and Raymond, J. (2008) Insights into cyanobacterial evolution from comparative genomics. The Cyanobacteria: Molecular Biology, Genomics and Evolution, A. Herrero and E. Flores, eds., Horizon Scientific Press, Norwich, UK. pp. 22-43.
Staples, C.R., Lahiri, S., Raymond, J., Von Herbulis, L., Mukhopadhyay, B., and Blankenship, R.E. (2007) The Expression and Association of Group IV Nitrogenase NifD and NifH Homologs in the Non-Nitrogen Fixing Archaeon Methanocaldococcus jannaschii. Journal of Bacteriology, 189, 7392-8.
Blankenship, R.E., Raymond, J., Staples, C., and Mukhopadhyay, B. (2007) Evolution of functional diversity in nitrogenase homologs. Proceeedings of the 15th International Conference on Nitrogen Fixation, in press.
Blankenship, R.E., Sadekar, S., and Raymond, J. (2007) The Evolutionary Transition from Anoxygenic to Oxygenic Photosynthesis. In: Falkowski, P.G. and Knoll, A.H. (Eds.) Evolution of Aquatic Phototrophs, Elsevier, Amsterdam, pp. 22-37.
Raymond, J. and Segré, D. (2006) The effect of oxygen on biochemical networks and the evolution of complex life. Science, 311, 1764-7.
Mix, L.J., Armstrong, J., Mandell, A., Moiser, A., Raymond, J., Raymond, S., Steward, F., von Braun, K., and Zhaxybayeva, O. (2006) The Astrobiology Primer: An Outline of General Knowledge. Astrobiology, 6, 735-813.
Sadekar, S., Raymond, J., and Blankenship, R.E. (2006) Conservation of Distantly Related Membrane Proteins: Photosynthetic Reaction Centers Share a Common Structural Core. Molecular Biology and Evolution, 23, 2001-7.
Raymond, J. (2006) Oxygen and the evolution of complex life. McGraw-Hill Encyclopedia of Science and Technology. NY: McGraw-Hill.
Raymond, J. and Blankenship, R.E. (2006) Evolutionary Relationships Among Type I Photosynthetic Reaction Centers. In: Photosystem I: The Plastocyanin:Ferredoxin Oxidoreductase. John H. Golbeck, Ed., Springer, Dordrecht, 669-682.
Raymond, J. (2005) The Evolution of Biological Carbon and Nitrogen Cycling—a Genomic Perspective. Reviews in Mineralogy & Geochemistry, 59, 211-31.
Raymond, J. and Blankenship, R.E. (2004) Biosynthetic Pathways, Gene Replacement and the Antiquity of Life. Geobiology, 2, 1472-4.
Raymond, J., Siefert, J.L., Staples, C.R., and Blankenship, R.E. (2004) The Natural History of Nitrogen Fixation. Molecular Biology and Evolution, 21, 541-54.
Zhaxybayeva, O., Hamel, L., Raymond, J., and Gogarten, J.P. (2004) Visualization of Phylogenetic Content of Five Genomes with Dekapentagonal Maps. Genome Biology, 5(3):R20.
Raymond J., and Blankenship, R.E. (2004) The evolutionary development of the protein complement of Photosystem II. Biochimica et Biophysica Acta, 1655, 133-9.
Olson, J.M. and Raymond, J. (2003) The FMO-protein is related to PscA in the reaction center of green sulfur bacteria. Photosynthesis Research, 75, 277-285.
Raymond, J. and Blankenship, R.E. (2003) Horizontal gene transfer in eukaryotic algal evolution. Proceedings of the NationalAcademy of Sciences, 100, 7419-7420.
Raymond, J., Zhaxybayeva, O., Gogarten, J.P., and Blankenship, R.E. (2003) Evolution of photosynthetic prokaryotes: a maximum likelihood mapping approach. Philosophical Transactions of the Royal Society of London B, 358, 223-230.
Raymond, J., Zhaxybayeva, O., Gogarten, J.P., and Blankenship, R.E. (2002) Whole genome analysis of photosynthetic prokaryotes, Science, 298, 1616-1620.
Blankenship, R.E., Raymond, J., Lince, M., Larkum, A.W.D., Jermiin, L.S., Lockhart, P.J., Zhaxybayeva, O., and Gogarten, J.P. (2001) Evolution of photosynthetic antennas and reaction centers. Proceedings of the 12th International Congress of Photosynthesis, CSIRO Publishing, Collingwood, Victoria, Australia.
Raymond, J. and Olson, J.M. (2001) Is FMO protein related to PscA in the reaction center of green sulfur bacteria? Proceedings of the 12th International Congress of Photosynthesis, CSIRO Publishing, Collingwood, Victoria, Australia.